1830 lines
89 KiB
C#
1830 lines
89 KiB
C#
using adas_core.Application.Services.Interfaces;
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using adas_core.Domain.Enums;
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using adas_core.Domain.Models;
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using adas_core.Domain.Models.AppSettings;
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using adas_core.Domain.Models.Pumps;
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using Microsoft.Extensions.DependencyInjection;
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using Microsoft.Extensions.Logging;
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using Microsoft.Extensions.Options;
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using MongoDB.Bson;
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namespace adas_core.Application.Customizations.H12O.UCIN;
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/// <summary>
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/// Implements the UCIN-specific clinical calculations that derive secondary
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/// <see cref="PatientObservation"/> values (Complexity, Oxygenation_Index, Respiratory, IntravenousLines,
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/// Medication, ERMedication, Monitor, Surgery, Temp_Gradient, TAm alert, etc.) from incoming
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/// raw observations and active <see cref="PatientTreatment"/> entries, using the catalogue of
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/// codes, groups, and types configured in <see cref="ApiSettings"/>.
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/// </summary>
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public class CalculatedObservations : ICalculatedObservations
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{
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private readonly List<string> _complexityObservations =
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["Respiratory", "IntravenousLines", "Medication", "Surgery", "Weight_Newborn", "Weight_Current", "Monitor"];
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private readonly List<string> _ecmo = [];
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private readonly List<string> _electroencephalogram = [];
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private readonly List<string> _highFrequencyVentilation = [];
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//private readonly List<string> _shift = [];
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private readonly Tuple<IntraVenousLineTypes, int, List<string>>[] _intraVenousLinesTypeValue =
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[
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Tuple.Create(IntraVenousLineTypes.Artery, 5,
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new List<string> { "Catéter arterial", "Catéter UMBILICAL arteria" }),
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Tuple.Create(IntraVenousLineTypes.CentralVein, 4,
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new List<string> { "Catéter venoso CENTRAL", "Catéter UMBILICAL vena" }),
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Tuple.Create(IntraVenousLineTypes.Picc, 3, new List<string> { "Catéter PICC" }),
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Tuple.Create(IntraVenousLineTypes.MiddleLine, 2,
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new List<string> { "Catéter línea media", "Catéter EPICUTÁNEO PERIFÉRICO" }),
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Tuple.Create(IntraVenousLineTypes.Peripheral, 1, new List<string> { "Catéter Venoso PERIFÉRICO" })
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];
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private readonly List<string> _invasiveVentilation = [];
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private readonly ILogger<CalculatedObservations> _logger;
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private readonly List<string> _medicationBolus = [];
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//private readonly Lazy<IMedicineService> medicineService;
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private readonly IMedicineService _medicineService;
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private readonly List<string> _nonInvasiveVentilation = [];
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//private readonly List<string> Oni = new List<string>();
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private readonly List<string> _notesIndicatingMedication = [];
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private readonly Lazy<IObservationService> _observationService;
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private readonly List<string> _oniCodes = [];
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private readonly List<string> _regionalBrainSaturation = [];
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private readonly List<string> _respiratory = [];
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private readonly Tuple<RespiratoryTypes, int, List<string>>[] _respiratoryTypeValue =
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[
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// Tuple.Create(RespiratoryTypes.INO, 10, new List<string>{ ""}),
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Tuple.Create(RespiratoryTypes.Vafo, 5, new List<string> { "V.A.F.O." }),
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Tuple.Create(RespiratoryTypes.Vmc, 3, new List<string> { "V.M.C." }),
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Tuple.Create(RespiratoryTypes.Vmni, 2, new List<string> { "V.N.I. Ciclada", "CPAP" }),
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Tuple.Create(RespiratoryTypes.NasalCannulas, 1, new List<string> { "Alto Flujo", "Bajo Flujo" }),
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Tuple.Create(RespiratoryTypes.None, 0, new List<string> { "Sin assistance respiratoria" })
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];
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private readonly List<string> _rxaStatus = ["Concluido"];
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private readonly List<string> _surgery = [];
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private readonly List<string> _surgeryText = [];
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private readonly List<string> _transcutanous = [];
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private readonly Lazy<ITreatmentService> _treatmentService;
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/// <summary>
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/// Initializes a new instance of the <see cref="CalculatedObservations"/> class,
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/// resolving its dependencies (observation, medicine, and treatment services, plus the logger)
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/// from the supplied <see cref="IServiceProvider"/> and loading the configured code catalogues
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/// (EEG, bolus medications, transcutaneous, regional brain saturation, surgery, respiratory,
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/// ONi, ventilation modes, ECMO, and notes indicating medication) from <see cref="ApiSettings"/>.
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/// </summary>
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/// <param name="serviceProvider">The application's service provider used to resolve the required dependencies and configuration.</param>
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public CalculatedObservations(IServiceProvider serviceProvider)
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{
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_observationService = serviceProvider.GetRequiredService<Lazy<IObservationService>>(); //observationService;
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_medicineService = serviceProvider.GetRequiredService<IMedicineService>(); //medicineService;
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_treatmentService = serviceProvider.GetRequiredService<Lazy<ITreatmentService>>(); //treatmentService;
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var apiSettings = serviceProvider.GetRequiredService<IOptions<ApiSettings>>(); //apiSettings;
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_logger = serviceProvider.GetRequiredService<ILogger<CalculatedObservations>>();
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var electroencephalogram = apiSettings.Value.Electroencephalogram ?? null;
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electroencephalogram?.ForEach(x => _electroencephalogram.Add(x.Trim()));
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var medicationBolus = apiSettings.Value.MedicationBolus ?? null;
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medicationBolus?.ForEach(x => _medicationBolus.Add(x.Trim()));
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var transcutaneous = apiSettings.Value.Transcutaneous ?? null;
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transcutaneous?.ForEach(x => _transcutanous.Add(x.Trim()));
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var regionalBrainSaturation = apiSettings.Value.RegionalBrainSaturation ?? null;
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regionalBrainSaturation?.ForEach(x => _regionalBrainSaturation.Add(x.Trim()));
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var surgery = apiSettings.Value.Surgery ?? null;
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surgery?.ForEach(x => _surgery.Add(x.Trim()));
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var surgeryText = apiSettings.Value.SurgeryText ?? null;
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surgeryText?.ForEach(x => _surgeryText.Add(x.Trim()));
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var respiratory = apiSettings.Value.Respiratory ?? null;
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respiratory?.ForEach(x => _respiratory.Add(x.Trim()));
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//inoCode = Respiratory.LastOrDefault();
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var oni = apiSettings.Value.Oni ?? null;
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oni?.ForEach(x => _oniCodes.Add(x.Trim()));
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var highFrequencyVentilation = apiSettings.Value.HighFrequencyVentilation ?? null;
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highFrequencyVentilation?.ForEach(x => _highFrequencyVentilation.Add(x.Trim()));
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var invasiveVentilation = apiSettings.Value.InvasiveVentilation ?? null;
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invasiveVentilation?.ForEach(x => _invasiveVentilation.Add(x.Trim()));
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var nonInvasiveVentilation = apiSettings.Value.NonInvasiveVentilation ?? null;
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nonInvasiveVentilation?.ForEach(x => _nonInvasiveVentilation.Add(x.Trim()));
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//var shift = apiSettings.Value.Shift ?? null;
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//shift?.ForEach(x => _shift.Add(x.Trim()));
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var notesIndicatingMedication =
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apiSettings.Value.NotesIndicatingMedication ?? null;
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notesIndicatingMedication?.ForEach(x => _notesIndicatingMedication.Add(x.Trim()));
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var ecmo = apiSettings.Value.Ecmo ?? null;
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ecmo?.ForEach(x => _ecmo.Add(x.Trim()));
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}
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/// <summary>
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/// Applies the appropriate clinical calculations to a raw patient observation based on its
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/// <see cref="BasePatientObservation.Name"/>, code, coding system, and expiration state, producing
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/// derived observations (respiratory assistance, oxygenation index, ventilation mode, TAm alert,
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/// parsed weight, temperature gradient, intravenous lines, monitor, surgery expiration, complexity,
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/// and hourly/temperature time-increment handling).
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/// </summary>
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/// <typeparam name="T">The concrete observation type, deriving from <see cref="BasePatientObservation"/>.</typeparam>
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/// <param name="obs">The observation to map or transform in-place.</param>
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/// <param name="onlyByName">
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/// Reserved for future use. When <see langword="true"/>, restricts the mapping strategy to
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/// name-based lookups only.
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/// </param>
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/// <returns>
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/// A <see cref="Task{T}"/> that resolves to the (possibly transformed) observation, or
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/// <see langword="null"/> when the input observation has no name.
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/// </returns>
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public async Task<T?> Map<T>(T obs, bool onlyByName) where T : BasePatientObservation
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{
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// Early exit: if the observation has no name, there's nothing to map
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if (string.IsNullOrEmpty(obs.Name)) return obs;
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// Respiratory observations: only process SNOMED-coded respiratory metrics
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if (!string.IsNullOrEmpty(obs.Code) && _respiratory.Contains(obs.Code) && obs.CodingSystem == "SNM")
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{
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_logger.LogDebug("Mapping observation Respiratorio {obs}", obs);
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await CalculateAsistResp(obs);
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}
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// Oxygenation index calculation: triggered by air pressure, FiO2, or PaO2 readings
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if (obs.Name is "AirPressure_Mean" or "FiO2" or "PaO2") await CalculateOxygenationIndex(obs);
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// Ventilation mode evaluation: processes respiratory mode changes
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if (obs.Name == "Resp_Mode")
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{
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_logger.LogDebug("Mapping Resp mode observation {obs}", obs);
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await CalculateVentilationMode(obs);
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}
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// Mean arterial pressure (TAm) alerting: includes gestational age considerations
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if (obs.Name is "TAm" or "Age_Gestational_Fixed" or "Age_Gestational") await CalculateTAmAlert(obs);
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// Weight parsing: only for active (non-expired) patient observations
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if (obs.Name is "Weight_Newborn" or "Weight_Current")
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if (obs is PatientObservation { Expired: false })
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obs = (T)await ParseWeight(obs);
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// Temperature gradient calculation between incubator and patient
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if (obs is { Name: "Temp_Incubator" } or { Name: "Temp_Patient" }) await CalculateTempGradient(obs);
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// Intravenous lines observation processing with potential transformation
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if (obs is { Name: "IntravenousLinesObs" })
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{
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var intraObs = await CalculateIntravenousLineObservation(obs);
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// Apply the transformed observation if calculation produced a result
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if (intraObs != null)
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obs = (T)intraObs;
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}
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// Regional brain saturation monitoring: pCO2tc or transcutaneous O2 with specific codes
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if (obs.Name is "pCO2tc" or "Transcutaneous_O2")
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if (obs.Code != null && _regionalBrainSaturation.Contains(obs.Code))
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await CalculateMonitor(obs);
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// Surgery-related expiration check
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if (obs.Name == "Surgery") await CheckSurgeryExpired(obs);
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// Complexity calculations for predefined complex observation types
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if (obs.Name != null && _complexityObservations.Contains(obs.Name))
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{
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_logger.LogDebug("Mapping observation Complexity {obs}", obs);
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await CalculateComplexity(obs);
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}
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// Hourly accumulation observations: diuresis, drainages, hydric balance, and fluid entries
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// These check for existing observations at the same time and increment values
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if (obs.Name != null && (obs.Name.Equals("Diuresis_Hour") ||
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obs.Name.Equals("Drainages_Hour") ||
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obs.Name.Equals("Hydric_Balance") ||
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obs.Name.Equals("IV_Entries_Hour") ||
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obs.Name.Equals("Enteral_Entries_Hour")))
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obs = (T)await CheckObsExistsAndIncrementTime(obs);
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// Temperature observations: handle duplicate time entries by incrementing time
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if (obs.Name != null && (obs.Name.Equals("Temp_Patient") ||
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obs.Name.Equals("Temp_Incubator")
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))
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obs = (T)await CheckObsWithSameTimeExistsAndIncrementTime(obs);
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return obs;
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}
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/// <summary>
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/// Maps a <see cref="PatientTreatment"/> to its processed form, computing the end time of single-dose
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/// treatments, evaluating the medicines associated with the treatment's codes/notes, and dispatching
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/// the appropriate downstream calculations (bolus, monitor, surgery, ECMO complexity, and ONi observations)
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/// based on the configured code catalogues.
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/// </summary>
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/// <param name="treatment">The <see cref="PatientTreatment"/> to be mapped.</param>
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/// <returns>A task that represents the asynchronous mapping operation. The task result contains the processed <see cref="PatientTreatment"/>.</returns>
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/// <exception cref="ArgumentNullException">Thrown when the <paramref name="treatment"/> parameter is <c>null</c>.</exception>
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public async Task<PatientTreatment> Map(PatientTreatment treatment)
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{
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if (treatment.SingleDose)
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treatment = CalculateSingleDoseEndDate(treatment);
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var tempTreatment = treatment;
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await CheckTreatmentMedicines(tempTreatment);
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if (tempTreatment.RequestedGiveCodes.Any())
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{
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if (tempTreatment.RequestedGiveCodes.Any(t =>
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_medicationBolus.Contains(t.Identifier))) //remove && t.codingSystem == "FTPCS" not match always
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{
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_logger.LogDebug("Medication Bolus detected. Creating calculated observation");
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await CalculateBolus(tempTreatment);
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}
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if (tempTreatment.RequestedGiveCodes.Any(t => _electroencephalogram.Contains(t.Identifier)))
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await CalculateMonitor(tempTreatment);
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if (tempTreatment.RequestedGiveCodes.Any(t =>
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_surgery.Contains(t.Identifier) && _surgeryText.Contains(t.Text)))
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await CalculateSurgery(tempTreatment);
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if (treatment.RequestedGiveCodes.Any(t => _ecmo.Contains(t.Identifier)))
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//If ecmo treatment is NW recalculate complexity to show ECMO if is DC recalculate complexity
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await CalculateComplexityOnEcmo(treatment);
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if (tempTreatment.RequestedGiveCodes.Any(t => _oniCodes.Contains(t.Identifier)))
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{
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if (tempTreatment.OrderControl == OrderControlType.Nw)
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{
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var oniObservation = new PatientObservation
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{
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PatientId = treatment.PatientId,
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Code = "84481000140102",
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Name = "ONi",
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CodingSystem = "MDC",
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Value = tempTreatment.RequestedGiveAmountMinimum ?? '-',
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Time = tempTreatment.OrderTime ?? DateTime.Now,
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Units = "ppm"
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};
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await _observationService.Value.InsertObservation(oniObservation, mapObs: false);
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}
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if (treatment.OrderControl == OrderControlType.Dc)
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{
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var lastOnis = await _observationService.Value.FindLastObservations(treatment.PatientId, 1,
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["ONi"]);
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var lastOni = lastOnis.FirstOrDefault();
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if (lastOni == null) return treatment;
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lastOni.Expired = true;
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await _observationService.Value.UpdateObservation(lastOni);
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await _observationService.Value.InsertObservation(lastOni, false);
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}
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}
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}
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return treatment;
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}
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/// <summary>
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/// Identity mapping for a <see cref="PumpObservation"/>: returns the supplied instance unchanged,
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/// wrapped in a completed task. Provided to satisfy the customization contract; pump observations
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/// do not currently require UCIN-specific calculation.
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/// </summary>
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/// <param name="pumpObservation">The pump observation to map.</param>
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/// <returns>A task containing the same <see cref="PumpObservation"/> instance that was passed in.</returns>
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public async Task<PumpObservation> Map(PumpObservation pumpObservation)
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{
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return await Task.FromResult(pumpObservation);
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}
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/// <summary>
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/// Convenience overload that recalculates the "Medication" and "ERMedication" observations for a
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/// patient using the supplied list of active medicines, building a transient <see cref="PatientTreatment"/>
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/// for the underlying call.
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/// </summary>
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/// <param name="activeMedicines">The list of active <see cref="Medicine"/> instances currently associated with the patient.</param>
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/// <param name="patientId">The unique identifier of the patient.</param>
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/// <returns>A task that represents the asynchronous calculation operation.</returns>
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public async Task CalculateMedicineObservation(List<Medicine> activeMedicines, ObjectId patientId)
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{
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await CalculateMedicineObservation(activeMedicines, [], new PatientTreatment { PatientId = patientId });
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}
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/// <summary>
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/// Recalculates the "OpiateBoluses" observation for a patient based on the bolus treatments
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/// returned by <c>GetActiveBolus</c>. Skips persistence when the value is unchanged from the
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/// last stored observation.
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/// </summary>
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/// <param name="patientId">The unique identifier of the patient.</param>
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/// <returns>A task that represents the asynchronous calculation operation.</returns>
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public async Task CalculateActiveBolus(ObjectId patientId)
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{
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// SIN RXA
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/*
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* var activeBolus = treatmentService.Value.GetActiveTreatmentsByPatient(patientId)
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.FindAll(p => p.requestedGiveCodes.Any(r => MedicationBolus.Contains(r.identifier)) && p.orderTime > DateTime.Now.AddHours(-12) && p.boloPom);
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var bolusObs = new PatientObservation()
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{
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patientid = patientId,
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time = DateTime.Now,
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//code = "MedicationBolus", //treatment.requestedGiveCode.identifier,
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//codingSystem = "ADAS", //treatment.requestedGiveCode.codingSystem,
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name = "OpiateBoluses",
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codingSystem = "ADAS",
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value = activeBolus.Count
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};
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var lastBolus = observationService.Value.FindLastObservations(patientId, 1, new List<string> { "OpiateBoluses" }).FirstOrDefault();
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if (lastBolus != null && int.Parse(lastBolus.value.ToString()) == int.Parse(bolusObs.value.ToString()))
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{
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return;
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}
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observationService.Value.InsertObservation(bolusObs);
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*/
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//Por RXA
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var activeBolus = await GetActiveBolus(patientId, null);
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var bolusObs = new PatientObservation
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{
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PatientId = patientId,
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Time = DateTime.Now,
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//code = "MedicationBolus", //treatment.requestedGiveCode.identifier,
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//codingSystem = "ADAS", //treatment.requestedGiveCode.codingSystem,
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Name = "OpiateBoluses",
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CodingSystem = "ADAS",
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Value = activeBolus.Count
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};
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var lastsBolus = await _observationService.Value.FindLastObservations(patientId, 1, ["OpiateBoluses"]);
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var lastBolus = lastsBolus.FirstOrDefault();
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if (lastBolus != null && int.TryParse(lastBolus.Value.ToString(), out var lastbolus) &&
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int.TryParse(bolusObs.Value.ToString(), out var bolusobs) && lastbolus == bolusobs) return;
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await _observationService.Value.InsertObservation(bolusObs, mapObs: false);
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}
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/// <summary>
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/// Retrieves all treatments currently considered active for the specified patient, delegating
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/// the actual retrieval to the configured <see cref="ITreatmentService"/>.
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/// </summary>
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/// <param name="id">The unique identifier of the patient.</param>
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/// <returns>A collection of active <see cref="PatientTreatment"/> objects for the patient.</returns>
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public async Task<IEnumerable<PatientTreatment?>> GetActiveTreatmentsByPatient(ObjectId id)
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{
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var activeTreatments = await _treatmentService.Value.GetActiveTreatmentsByPatient(id);
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return activeTreatments;
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}
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/// <summary>
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/// Identity mapping for a <see cref="PatientDiagnosis"/>: returns the supplied instance unchanged,
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/// wrapped in a completed task. Provided to satisfy the customization contract; diagnoses do not
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/// currently require UCIN-specific calculation.
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/// </summary>
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/// <param name="diagnosis">The <see cref="PatientDiagnosis"/> to map.</param>
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/// <returns>A task containing the same <see cref="PatientDiagnosis"/> instance that was passed in.</returns>
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public Task<PatientDiagnosis> Map(PatientDiagnosis diagnosis)
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{
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return Task.FromResult(diagnosis);
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}
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/// <summary>
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/// Resolves time-inconsistencies for a new patient observation when it arrives with the same
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/// (down-to-the-second) timestamp as the latest stored observation of the same name. The new
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/// observation's <c>Time</c> is shifted forward by one second, and a fresh <see cref="ObjectId"/>
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/// is generated to avoid duplicate-key collisions.
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/// </summary>
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/// <param name="newObservation">The new patient observation to evaluate for time inconsistencies.</param>
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/// <returns>
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/// A task that represents the asynchronous operation. The task result contains the fixed
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/// <see cref="PatientObservation"/> if the input had a valid name; otherwise, <see langword="null"/>.
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/// </returns>
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public async Task<PatientObservation?> FixTimeInconsistencyWithLast(PatientObservation newObservation)
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{
|
||
if (string.IsNullOrEmpty(newObservation.Name))
|
||
{
|
||
_logger.LogError("Observation name is null or empty: {newObservation}", newObservation);
|
||
return null;
|
||
}
|
||
|
||
var lastObservations =
|
||
await _observationService.Value.FindLastObservations(newObservation.PatientId, 1, [newObservation.Name]);
|
||
|
||
var lastObservation = lastObservations.FirstOrDefault();
|
||
|
||
if (lastObservation != null && DateTime.Compare(
|
||
new DateTime(lastObservation.Time.Year, lastObservation.Time.Month,
|
||
lastObservation.Time.Day, lastObservation.Time.Hour,
|
||
lastObservation.Time.Minute, lastObservation.Time.Second),
|
||
new DateTime(newObservation.Time.Year, newObservation.Time.Month,
|
||
newObservation.Time.Day, newObservation.Time.Hour,
|
||
newObservation.Time.Minute, newObservation.Time.Second)
|
||
) >= 0)
|
||
newObservation.Time = lastObservation.Time.AddSeconds(1);
|
||
|
||
newObservation.Id = ObjectId.GenerateNewId();
|
||
|
||
return newObservation;
|
||
}
|
||
|
||
/// <summary>
|
||
/// Identity mapping for a list of <see cref="PatientObservation"/> instances: returns the supplied
|
||
/// list unchanged, wrapped in a completed task. Provided to satisfy the customization contract;
|
||
/// the pre-mapping phase does not currently require UCIN-specific transformation.
|
||
/// </summary>
|
||
/// <param name="listToInsert">The list of patient observations to be pre-mapped.</param>
|
||
/// <returns>A task containing the original list of patient observations.</returns>
|
||
public Task<List<PatientObservation>> PreMapList(List<PatientObservation> listToInsert)
|
||
{
|
||
return Task.FromResult(listToInsert);
|
||
}
|
||
|
||
/// <summary>
|
||
/// Identity mapping for a source alarm observation paired with a <see cref="PatientObservationAlarm"/>:
|
||
/// returns the supplied observation unchanged, wrapped in a completed task. Provided to satisfy the
|
||
/// customization contract; alarms are not currently transformed in the UCIN customization.
|
||
/// </summary>
|
||
/// <param name="obs">The patient observation that triggered the alarm.</param>
|
||
/// <param name="alarmToInsert">The alarm metadata to be inserted alongside the observation.</param>
|
||
/// <returns>A task containing the same <see cref="PatientObservation"/> instance that was passed in.</returns>
|
||
public Task<PatientObservation> MapSourceAlarm(PatientObservation obs, PatientObservationAlarm alarmToInsert)
|
||
{
|
||
return Task.FromResult(obs);
|
||
}
|
||
|
||
/// <summary>
|
||
/// Placeholder alarm dispatch hook used by the customization contract. The UCIN customization
|
||
/// does not currently implement custom alarm dispatching; calling this method always throws.
|
||
/// </summary>
|
||
/// <param name="obs">The patient observation that triggered the alarm.</param>
|
||
/// <param name="name">The alarm display name.</param>
|
||
/// <param name="code">The optional alarm code from <see cref="AlarmEnum.Name"/>.</param>
|
||
/// <returns>Never returns a result.</returns>
|
||
/// <exception cref="NotImplementedException">Always thrown because alarm dispatch is not implemented in the UCIN customization.</exception>
|
||
public Task SendAlarm(PatientObservation obs, string name, AlarmEnum.Name? code)
|
||
{
|
||
throw new NotImplementedException();
|
||
}
|
||
|
||
/// <summary>
|
||
/// When a "Surgery" observation is marked as expired, inserts a follow-up "Surgery" observation
|
||
/// with value <c>0</c> at the same time plus one second, signaling that the surgery complexity
|
||
/// contribution has been removed. Errors are logged and rethrown.
|
||
/// </summary>
|
||
/// <param name="obs">The base patient observation expected to be a <see cref="PatientObservation"/> with <c>Name == "Surgery"</c>.</param>
|
||
/// <returns>A task that represents the asynchronous insert operation.</returns>
|
||
/// <exception cref="InvalidCastException">Thrown when <paramref name="obs"/> cannot be cast to <see cref="PatientObservation"/>.</exception>
|
||
/// <exception cref="Exception">Rethrown after the underlying exception is written to the console for diagnostics.</exception>
|
||
public async Task CheckSurgeryExpired(BasePatientObservation obs)
|
||
{
|
||
try
|
||
{
|
||
var pobs = (PatientObservation)obs;
|
||
if (!pobs.Expired) return;
|
||
var surgeryObs = new PatientObservation
|
||
{
|
||
PatientId = obs.PatientId,
|
||
Name = "Surgery",
|
||
Min = 0,
|
||
Max = 5,
|
||
CodingSystem = "ADAS",
|
||
Time = obs.Time.AddSeconds(1),
|
||
Value = 0,
|
||
Expires = pobs.Expires
|
||
};
|
||
_logger.LogDebug("CheckSurgeryExpired. Inserting: {obs}", surgeryObs.ToString());
|
||
|
||
await _observationService.Value.InsertObservation(surgeryObs, mapObs: false);
|
||
}
|
||
catch (Exception e)
|
||
{
|
||
Console.WriteLine(e);
|
||
throw;
|
||
}
|
||
}
|
||
|
||
/// <summary>
|
||
/// For hourly accumulation observations, checks whether another observation with the same name
|
||
/// already exists within the same hour and, if so, shifts this observation's <c>Time</c> forward
|
||
/// by one second so the system can identify the most recent entry.
|
||
/// </summary>
|
||
/// <param name="obs">The base patient observation expected to be a <see cref="PatientObservation"/>.</param>
|
||
/// <returns>A task that represents the asynchronous operation. The task result contains the (possibly time-shifted) base patient observation.</returns>
|
||
public async Task<BasePatientObservation> CheckObsExistsAndIncrementTime(BasePatientObservation obs)
|
||
{
|
||
var pobs = (PatientObservation)obs;
|
||
|
||
var lastObsFromHour =
|
||
await _observationService.Value.FindLastBeforeDate(pobs.PatientId, pobs.Time.AddMinutes(59), obs.Name);
|
||
|
||
if (lastObsFromHour != null &&
|
||
DateTime.Compare(new DateTime(lastObsFromHour.Time.Year, lastObsFromHour.Time.Month,
|
||
lastObsFromHour.Time.Day, lastObsFromHour.Time.Hour, 0, 0)
|
||
, new DateTime(pobs.Time.Year, pobs.Time.Month, pobs.Time.Day, pobs.Time.Hour, 0, 0)) == 0)
|
||
pobs.Time = lastObsFromHour.Time.AddSeconds(1);
|
||
|
||
return pobs;
|
||
}
|
||
|
||
/// <summary>
|
||
/// For temperature observations, checks whether another observation with the same name already
|
||
/// exists at the exact same timestamp and, if so, shifts this observation's <c>Time</c> forward
|
||
/// by one second so the system can identify the most recent entry.
|
||
/// </summary>
|
||
/// <param name="obs">The base patient observation expected to be a <see cref="PatientObservation"/>.</param>
|
||
/// <returns>A task that represents the asynchronous operation. The task result contains the (possibly time-shifted) base patient observation.</returns>
|
||
public async Task<BasePatientObservation> CheckObsWithSameTimeExistsAndIncrementTime(BasePatientObservation obs)
|
||
{
|
||
var pobs = (PatientObservation)obs;
|
||
var existObsWithSameTime =
|
||
await _observationService.Value.FindAnyWithSameDate(pobs.PatientId, pobs.Time, pobs.Name);
|
||
|
||
if (existObsWithSameTime != null && existObsWithSameTime.Any()) pobs.Time = pobs.Time.AddSeconds(1);
|
||
|
||
return pobs;
|
||
}
|
||
|
||
/// <summary>
|
||
/// Computes the Oxygenation Index (PMAP × FiO2 × 100 / PaO2) using the supplied observation plus
|
||
/// the latest stored <c>AirPressure_Mean</c>, <c>FiO2</c>, and <c>PaO2</c> values. Persists the
|
||
/// resulting <c>Oxygenation_Index</c> observation with a 10-second expiration matching FiO2's
|
||
/// expiration window. Skipped gracefully when PaO2 is zero, when any of the inputs cannot be
|
||
/// parsed, or when an exception is caught and logged.
|
||
/// </summary>
|
||
/// <param name="obs">The observation that triggered the calculation (one of <c>AirPressure_Mean</c>, <c>FiO2</c>, or <c>PaO2</c>).</param>
|
||
/// <returns>A task that represents the asynchronous calculation operation.</returns>
|
||
public async Task CalculateOxygenationIndex(BasePatientObservation obs)
|
||
{
|
||
var toSearchList = new List<string>();
|
||
PatientObservation? airPressMeanObs = null;
|
||
PatientObservation? fiO2Obs = null;
|
||
PatientObservation? paO2Obs = null;
|
||
|
||
try
|
||
{
|
||
toSearchList.AddRange(new List<string> { "AirPressure_Mean", "FiO2", "PaO2" });
|
||
|
||
var values = await _observationService.Value.FindLastObservations(obs.PatientId, 1, toSearchList);
|
||
|
||
switch (obs.Name)
|
||
{
|
||
case "AirPressure_Mean":
|
||
airPressMeanObs = (PatientObservation)obs;
|
||
fiO2Obs = values.FirstOrDefault(o => o.Name == "FiO2");
|
||
paO2Obs = values.FirstOrDefault(o => o.Name == "PaO2");
|
||
break;
|
||
|
||
case "FiO2":
|
||
fiO2Obs = (PatientObservation)obs;
|
||
airPressMeanObs = values.FirstOrDefault(o => o.Name == "AirPressure_Mean");
|
||
paO2Obs = values.FirstOrDefault(o => o.Name == "PaO2");
|
||
break;
|
||
|
||
case "PaO2":
|
||
paO2Obs = (PatientObservation)obs;
|
||
fiO2Obs = values.FirstOrDefault(p => p.Name == "FiO2");
|
||
airPressMeanObs = values.FirstOrDefault(o => o.Name == "AirPressure_Mean");
|
||
break;
|
||
}
|
||
|
||
|
||
//Controlar que fio2 no haya expirada al recogerla
|
||
if (fiO2Obs != null && paO2Obs != null && airPressMeanObs != null)
|
||
if (int.TryParse(airPressMeanObs.Value.ToString(), out var airPressureMean) &&
|
||
int.TryParse(fiO2Obs.Value.ToString(), out var fio2) &&
|
||
int.TryParse(paO2Obs.Value.ToString(), out var pao2))
|
||
{
|
||
if (pao2 == 0)
|
||
{
|
||
_logger.LogWarning(
|
||
"Calculate Oxygenation Index observation. PaO2: {pao2}, observation: {obsName}", pao2,
|
||
obs.Name);
|
||
return;
|
||
}
|
||
|
||
var oxygenationIndexValue = airPressureMean * fio2 * 100 / pao2;
|
||
|
||
var oxygenationIndexObs = new PatientObservation
|
||
{
|
||
PatientId = obs.PatientId,
|
||
Name = "Oxygenation_Index",
|
||
CodingSystem = "ADAS",
|
||
Value = oxygenationIndexValue,
|
||
Time = DateTime.Now,
|
||
Expires = 10 //Expires in 10 seg because its FiO2 expire time.
|
||
};
|
||
|
||
await _observationService.Value.InsertObservation(oxygenationIndexObs, mapObs: false);
|
||
}
|
||
}
|
||
catch (Exception ex)
|
||
{
|
||
_logger.LogError("Error calculate Oxygenation Index observation. Exception: {exMessage}", ex.Message);
|
||
}
|
||
}
|
||
|
||
/// <summary>
|
||
/// Sets the <c>EndTime</c> of a single-dose treatment to 8 hours after its <c>OrderTime</c>
|
||
/// (or 8 hours from now when <c>OrderTime</c> is <see langword="null"/>).
|
||
/// </summary>
|
||
/// <param name="treatment">The single-dose treatment whose end time is to be calculated.</param>
|
||
/// <returns>The same <see cref="PatientTreatment"/> instance with its <c>EndTime</c> updated.</returns>
|
||
private static PatientTreatment CalculateSingleDoseEndDate(PatientTreatment treatment)
|
||
{
|
||
/* Deprecated calc finish treatment date on shift end. Now every treatment single dose is last 8 Hours
|
||
DateTime now = DateTime.UtcNow;
|
||
//Turno actual, tenemos que poner como fecha fin la fecha de inicio del turno siguiente
|
||
var shiftNow = Shift.Where(
|
||
i => DateTime.ParseExact(i, "HH:mm", CultureInfo.InvariantCulture).Ticks < DateTime.Now.Ticks
|
||
).LastOrDefault();
|
||
|
||
var index = Shift.IndexOf(shiftNow);
|
||
|
||
string endDateShift;
|
||
|
||
if (Shift.Count <= index + 1) endDateShift = Shift[0];
|
||
else endDateShift = Shift[index + 1];
|
||
|
||
var HourMinutes = endDateShift.Split(':');
|
||
|
||
if (now.Hour.CompareTo(int.Parse(HourMinutes[0])) > 0)
|
||
now = now.AddDays(1);
|
||
|
||
DateTime finisTreatmentDate = new DateTime(now.Year, now.Month, now.Day, int.Parse(HourMinutes[0]), int.Parse(HourMinutes[1]), 0);
|
||
*/
|
||
treatment.EndTime = treatment.OrderTime?.AddHours(8) ?? DateTime.Now.AddHours(8);
|
||
return treatment;
|
||
}
|
||
|
||
/// <summary>
|
||
/// Resolves the medicines associated with a treatment (by matching its codes and notes against the
|
||
/// medicine catalogue, falling back to <c>NotesIndicatingMedication</c> patterns), aggregates the
|
||
/// patient's active treatments and medicines, detects parenteral nutrition (NPT) treatments, and
|
||
/// triggers <c>CalculateMedicineObservation</c> to update the Medication and ERMedication observations.
|
||
/// </summary>
|
||
/// <param name="treatment">The treatment whose medicines should be checked.</param>
|
||
/// <returns>A task that represents the asynchronous check operation.</returns>
|
||
public async Task CheckTreatmentMedicines(PatientTreatment treatment)
|
||
{
|
||
//sI TIENE UNA NOTA CON NPT SON DE TIPO NUTRICIÓN PARENTERAL Y SUMAN 1
|
||
var listNotesCode = treatment.Notes.Select(note => note.Comment).ToList();
|
||
|
||
if (treatment.RequestedGiveCodes.Any())
|
||
listNotesCode.AddRange(treatment.RequestedGiveCodes.Select(treatmentCodes => treatmentCodes.Identifier));
|
||
|
||
//var medicines = medicineService.Value.GetByCodeOrNote(listNotesCode);
|
||
var medicines = await _medicineService.GetByCodeOrNote(listNotesCode);
|
||
var parentalNutritionMedicine = await CalculateParentalNutritionMedicine(treatment);
|
||
medicines.Add(parentalNutritionMedicine);
|
||
|
||
//If not detect any medicine in medicine table, check if contáis NTE with, if it's true, it's a medicine.
|
||
/*
|
||
NTE|||Medicación|^OrderDefinition\r
|
||
|
||
NTE|||Perfusiones|^OrderDefinition\r
|
||
|
||
NTE|||SUEROS Y HEMODER|^OrderDefinition\r
|
||
*/
|
||
if (medicines is { Count: 0 })
|
||
{
|
||
var isMedicine = treatment.Notes.Any(n => _notesIndicatingMedication.Contains(n.Comment));
|
||
|
||
if (isMedicine && treatment.RequestedGiveCodes is { Count: > 0 })
|
||
treatment.RequestedGiveCodes.ForEach(c =>
|
||
{
|
||
if (!string.IsNullOrEmpty(c.Identifier))
|
||
medicines.Add(new Medicine
|
||
{
|
||
Codes = [c.Identifier],
|
||
Name = c.Text
|
||
});
|
||
});
|
||
}
|
||
|
||
if (medicines.Any())
|
||
{
|
||
if (!string.IsNullOrEmpty(treatment.RequestedGiveTreatment))
|
||
try
|
||
{
|
||
medicines =
|
||
[
|
||
new Medicine
|
||
{
|
||
Name = treatment.RequestedGiveTreatment,
|
||
Type = medicines.FindAll(t => t.Type.Any())
|
||
.Select(m => m.Type.Aggregate((x, y) => x + "," + y)).Distinct().ToList(),
|
||
Codes = medicines.FindAll(t => t.Codes.Any())
|
||
.Select(m => m.Codes.Aggregate((x, y) => x + "," + y)).Distinct().ToList(),
|
||
Group = medicines.FindAll(t => t.Group.Any())
|
||
.Select(m => m.Group.Aggregate((x, y) => x + "," + y)).Distinct().ToList(),
|
||
Notes = medicines.FindAll(t => t.Notes.Any())
|
||
.Select(m => m.Notes.Aggregate((x, y) => x + "," + y)).Distinct().ToList()
|
||
}
|
||
];
|
||
}
|
||
catch (Exception ex)
|
||
{
|
||
_logger.LogError("Error Checking Treatment Medicines. {medicines} . Exception {ex}",
|
||
string.Join(",", medicines), ex);
|
||
}
|
||
|
||
var _ = await GetActiveTreatmentsByPatient(treatment.PatientId);
|
||
var activeTreatments = _.ToList();
|
||
//var activeMedicines = medicineService.Value.GetMedicinesOfTreatments(activeTreatments);
|
||
var __ = await _medicineService.GetMedicinesOfTreatments(activeTreatments);
|
||
var activeMedicines = __.ToList();
|
||
|
||
var activeNptTreatments =
|
||
activeTreatments.FindAll(t => t?.Notes.FirstOrDefault(n => n.Comment == "NPT") != null);
|
||
if (activeNptTreatments.Count > 0)
|
||
{
|
||
//activeMedicines.AddRange((IEnumerable<Medicine>)activeNPTTreatments.Select(async s => await CalculateParentalNutritionMedicine(s)).Where(parentalMedicine => parentalMedicine != null));
|
||
//activeMedicines.AddRange(await Task.WhenAll(activeNPTTreatments.Select(async s => await CalculateParentalNutritionMedicine(s))).Where(parentalMedicine => parentalMedicine != null));
|
||
|
||
var tasks = activeNptTreatments.Select(async s => await CalculateParentalNutritionMedicine(s));
|
||
var taskResults = await Task.WhenAll(tasks);
|
||
var filteredMedicines = taskResults.ToList();
|
||
if (filteredMedicines.Any()) filteredMedicines.ForEach(m => { activeMedicines.Add(m); });
|
||
}
|
||
|
||
await CalculateMedicineObservation(activeMedicines, medicines, treatment);
|
||
}
|
||
}
|
||
|
||
/// <summary>
|
||
/// Builds a synthetic <see cref="Medicine"/> representing parenteral nutrition (NPT) when the
|
||
/// treatment's notes indicate a NPT order. Lipid-based NPTs are tagged with
|
||
/// <c>ParenteralNutritionLipids</c>; all other NPTs are tagged with <c>ParenteralNutrition</c>.
|
||
/// </summary>
|
||
/// <param name="treatment">The treatment to inspect for NPT indicators, or <see langword="null"/>.</param>
|
||
/// <returns>A task that resolves to a <see cref="Medicine"/> instance describing the parenteral nutrition, or an unnamed, untyped instance when no NPT notes are present.</returns>
|
||
private static Task<Medicine> CalculateParentalNutritionMedicine(PatientTreatment? treatment)
|
||
{
|
||
List<string> medicineType = [];
|
||
Note? commentType = null;
|
||
if (treatment?.Notes.FirstOrDefault(n => n.Comment == "NPT") != null)
|
||
{
|
||
commentType = treatment.Notes.FirstOrDefault(n => n.CommentType == "formularybaseformulation");
|
||
|
||
|
||
if (treatment.Notes.FirstOrDefault(n =>
|
||
n.Comment is "LÍPIDOS NEONATALES AL 20%" or "LÍPIDOS NEONATALES AL 20% CON...") != null)
|
||
medicineType = [nameof(MedicineEnum.Types.ParenteralNutritionLipids)];
|
||
else
|
||
medicineType = [nameof(MedicineEnum.Types.ParenteralNutrition)];
|
||
}
|
||
|
||
var medicine = new Medicine
|
||
{
|
||
Type = medicineType,
|
||
Name = commentType != null ? commentType.Comment : "UnNamed"
|
||
};
|
||
return Task.FromResult(medicine);
|
||
}
|
||
|
||
/// <summary>
|
||
/// Maintains the patient's active medicine list according to the treatment's <c>OrderControl</c>
|
||
/// (<c>NW</c> adds, <c>XO</c> adds if missing, <c>DC</c> removes), counts the distinct medicine
|
||
/// types, persists the <c>Medication</c> observation if its value changed, and then recalculates
|
||
/// the <c>ERMedication</c> observation.
|
||
/// </summary>
|
||
/// <param name="activeMedicines">The list of active medicines for the patient. Modified in-place.</param>
|
||
/// <param name="medicines">The medicines to add or remove depending on <c>OrderControl</c>.</param>
|
||
/// <param name="treatment">The treatment that triggered the recalculation.</param>
|
||
/// <returns>A task that represents the asynchronous calculation operation.</returns>
|
||
public async Task CalculateMedicineObservation(List<Medicine> activeMedicines, List<Medicine> medicines,
|
||
PatientTreatment treatment)
|
||
{
|
||
var medicinesWithType = activeMedicines.FindAll(m => m.Type.Any());
|
||
|
||
foreach (var medicine in medicines)
|
||
if (treatment.OrderControl is OrderControlType.Nw or OrderControlType.Xo)
|
||
{
|
||
if (treatment.StartTime != null && DateTime.UtcNow.CompareTo(treatment.StartTime) < 0) return;
|
||
|
||
if (treatment.OrderControl == OrderControlType.Nw)
|
||
activeMedicines.Add(medicine);
|
||
|
||
if (treatment.OrderControl == OrderControlType.Xo
|
||
&& activeMedicines.All(m => m.Name != medicine.Name)) activeMedicines.Add(medicine);
|
||
|
||
if (medicinesWithType != null &&
|
||
medicinesWithType.All(m => m.Type != medicine.Type))
|
||
medicinesWithType.Add(medicine);
|
||
}
|
||
else if (treatment.OrderControl == OrderControlType.Dc)
|
||
{
|
||
if (medicinesWithType != null)
|
||
{
|
||
medicinesWithType.Remove(medicine);
|
||
activeMedicines.RemoveAll(m => m.Name == medicine.Name);
|
||
}
|
||
}
|
||
|
||
var medicineTypes = medicinesWithType!.SelectMany(m => m.Type.Select(t => new { type = t }))
|
||
.GroupBy(x => x.type).Count();
|
||
|
||
var medicineObs = new PatientObservation
|
||
{
|
||
PatientId = treatment.PatientId,
|
||
Name = "Medication",
|
||
CodingSystem = "ADAS",
|
||
Value = medicineTypes,
|
||
Time = DateTime.Now
|
||
};
|
||
|
||
var lastMedicationsObs = await _observationService.Value.FindLastObservations(treatment.PatientId, 1,
|
||
["Medication"]);
|
||
var lastMedicationObs = lastMedicationsObs.FirstOrDefault();
|
||
if (lastMedicationObs == null || !lastMedicationObs.Value.Equals(medicineObs.Value))
|
||
await _observationService.Value.InsertObservation(medicineObs, mapObs: false);
|
||
|
||
await CalculateErMedication(activeMedicines, treatment);
|
||
}
|
||
|
||
/// <summary>
|
||
/// Calculates the patient's risk level from their active medicines and persists the
|
||
/// <c>ERMedication</c> observation with min/max bounds of 0 and 5, skipping persistence
|
||
/// when the value matches the last stored observation.
|
||
/// </summary>
|
||
/// <param name="activeMedicines">The list of active medicines used to derive the risk level.</param>
|
||
/// <param name="treatment">The treatment that triggered the recalculation.</param>
|
||
/// <returns>A task that represents the asynchronous calculation operation.</returns>
|
||
private async Task CalculateErMedication(List<Medicine> activeMedicines, PatientTreatment treatment)
|
||
{
|
||
//var activeTreatments = treatmentService.Value.GetActiveTreatmentsByPatient(treatment.patientid);
|
||
var result = await CalculateErMedicineLevels(activeMedicines);
|
||
|
||
|
||
var erMedicationObs = new PatientObservation
|
||
{
|
||
Name = "ERMedication",
|
||
CodingSystem = "ADAS",
|
||
PatientId = treatment.PatientId,
|
||
Time = DateTime.Now,
|
||
Min = 0,
|
||
Max = 5,
|
||
Value = result
|
||
};
|
||
|
||
var lastErMedicationsObsList = await _observationService.Value.FindLastObservations(treatment.PatientId, 1,
|
||
["ERMedication"]);
|
||
var lastErMedicationObs = lastErMedicationsObsList.FirstOrDefault();
|
||
if (lastErMedicationObs == null || !lastErMedicationObs.Value.Equals(erMedicationObs.Value))
|
||
await _observationService.Value.InsertObservation(erMedicationObs, mapObs: false);
|
||
}
|
||
|
||
/// <summary>
|
||
/// Maps the patient's active medicine list to a discrete risk level (0 to 5) based on medicine
|
||
/// types and groups: lipidic parenteral nutrition or multiple high-risk medicines map to 5,
|
||
/// non-lipid NPT or one or two high-risk medicines map to 4, metabolic medicines map to 2,
|
||
/// remaining medicines map to 1, and a list containing only iron/vitamin D maps to 0.
|
||
/// </summary>
|
||
/// <param name="activeMedicines">The list of active medicines to evaluate.</param>
|
||
/// <returns>A task that resolves to the integer risk level (0–5).</returns>
|
||
private static Task<int> CalculateErMedicineLevels(List<Medicine> activeMedicines)
|
||
{
|
||
var ironVitaminDCodes = new List<string> { "374424002", "175041000140104" };
|
||
|
||
//Aquí a cambiar que la nutrición parenteral siempre sume 4 no 5 quitar de medicinas de 5 solo suma 5 en caso de ser
|
||
//Los lípidos son dos órdenes de NP con el segmento RXO6.2 (NPT: 1 ml LÍPIDOS NEONATALES AL 20% CON MEDICAMENTOS 1 o
|
||
//NPT: 1 ml LÍPIDOS NEONATALES AL 20% 1)
|
||
|
||
var medicines5Points = activeMedicines.Where(m =>
|
||
m.Type.Contains(nameof(MedicineEnum.Types.Pge1)) ||
|
||
m.Type.Contains(nameof(MedicineEnum.Types.Insulin)) ||
|
||
m.Group.Contains(nameof(MedicineEnum.Group.DoubleSignature)) ||
|
||
m.Group.Contains(nameof(MedicineEnum.Group.Vasoactive)) ||
|
||
m.Type.Contains(nameof(MedicineEnum.Types.ParenteralNutritionLipids))
|
||
)
|
||
.ToList();
|
||
|
||
if (medicines5Points.Count > 2 ||
|
||
activeMedicines.FirstOrDefault(m =>
|
||
m.Type.Contains(nameof(MedicineEnum.Types.ParenteralNutritionLipids))) !=
|
||
null) return Task.FromResult(5);
|
||
|
||
if (medicines5Points.Count is > 0 and <= 2 ||
|
||
activeMedicines.FirstOrDefault(m => m.Type.Contains(nameof(MedicineEnum.Types.ParenteralNutrition))) !=
|
||
null
|
||
) return Task.FromResult(4);
|
||
|
||
var medicines2Points = activeMedicines.Where(m =>
|
||
m.Group.Contains(nameof(MedicineEnum.Group.Metabolic))
|
||
).ToList();
|
||
|
||
if (medicines2Points.Count > 0) return Task.FromResult(2);
|
||
|
||
//All medicines without type/group and not vitamin D or Iron
|
||
|
||
var medicines1Point = activeMedicines.FindAll(m => !m.Codes.Any(c => ironVitaminDCodes.Contains(c)));
|
||
|
||
if (medicines1Point.Count > 0) return Task.FromResult(1);
|
||
|
||
|
||
var ironVitaminDMedicines = activeMedicines.Where(m =>
|
||
m.Codes.Any(c => ironVitaminDCodes.Contains(c))
|
||
).ToList();
|
||
|
||
if (ironVitaminDMedicines.Count == activeMedicines.Count || activeMedicines.Count == 0)
|
||
return Task.FromResult(0);
|
||
|
||
return Task.FromResult(1);
|
||
}
|
||
|
||
/// <summary>
|
||
/// Maps a <c>Resp_Mode</c> observation's value to a discrete <c>Resp_Type</c> (HighFrequencyVentilation,
|
||
/// Invasive, NonInvasive, or None) by matching it against the configured catalogues for each mode.
|
||
/// </summary>
|
||
/// <param name="obs">The respiratory-mode observation expected to be a <see cref="PatientObservation"/>.</param>
|
||
/// <returns>A task that represents the asynchronous insert operation.</returns>
|
||
public async Task CalculateVentilationMode(BasePatientObservation obs)
|
||
{
|
||
var pobs = (PatientObservation)obs;
|
||
var respTypeObs = new PatientObservation
|
||
{
|
||
Name = "Resp_Type",
|
||
CodingSystem = "ADAS",
|
||
PatientId = obs.PatientId,
|
||
Time = obs.Time
|
||
};
|
||
|
||
var strValue = pobs.Value.ToString();
|
||
|
||
|
||
respTypeObs.Value = _highFrequencyVentilation.Contains(strValue ?? string.Empty)
|
||
? nameof(RespirationType.HighFrequencyVentilation)
|
||
: _invasiveVentilation.Contains(strValue ?? string.Empty)
|
||
? respTypeObs.Value = nameof(RespirationType.Invasive)
|
||
: _nonInvasiveVentilation.Contains(strValue ?? string.Empty)
|
||
? respTypeObs.Value = nameof(RespirationType.NonInvasive)
|
||
: nameof(RespirationType.None);
|
||
|
||
await _observationService.Value.InsertIfChanged("Resp_Type", respTypeObs);
|
||
}
|
||
|
||
/// <summary>
|
||
/// Calculates the patient's respiratory assistance score from the supplied observation's
|
||
/// <c>Value</c> (matched against the configured respiratory-type catalogue) or from the latest
|
||
/// stored <c>Resp_Mode</c> when the supplied observation is <c>ONi</c>. Active ONi treatment
|
||
/// (or a non-expired last ONi observation) forces the score to 10. Persists the resulting
|
||
/// <c>Respiratory</c> observation and returns the original input unchanged.
|
||
/// </summary>
|
||
/// <param name="obs">The base patient observation that triggered the calculation (expected to be a <see cref="PatientObservation"/>).</param>
|
||
/// <returns>A task that resolves to the same base patient observation that was passed in.</returns>
|
||
public async Task<BasePatientObservation> CalculateAsistResp(BasePatientObservation obs)
|
||
{
|
||
//Comprobar si hay un resp_type más nuevo y si no lo hay ignorar
|
||
|
||
var pobs = (PatientObservation)obs;
|
||
var lastsAsistResp = await _observationService.Value.FindLastObservations(obs.PatientId, 1, ["Resp_Mode"]);
|
||
var lastAsistResp = lastsAsistResp.FirstOrDefault();
|
||
if (lastAsistResp != null && lastAsistResp.Time.CompareTo(obs.Time) > 0 &&
|
||
lastAsistResp.Name != "ONi") return obs;
|
||
|
||
var calculatedRespiratory = new PatientObservation
|
||
{
|
||
PatientId = obs.PatientId,
|
||
Time = DateTime.Now,
|
||
CodingSystem = "ADAS",
|
||
Name = "Respiratory",
|
||
Value = 0
|
||
};
|
||
|
||
if (obs.Name == "ONi")
|
||
{
|
||
//find last assist resp obs
|
||
if (lastAsistResp != null)
|
||
{
|
||
var respiratoryValue = _respiratoryTypeValue.FirstOrDefault(r => r.Item3.Contains(lastAsistResp.Value));
|
||
if (respiratoryValue != null) calculatedRespiratory.Value = respiratoryValue.Item2;
|
||
}
|
||
}
|
||
else
|
||
{
|
||
var respiratoryValue = _respiratoryTypeValue.FirstOrDefault(r => r.Item3.Contains(pobs.Value));
|
||
|
||
if (respiratoryValue != null) calculatedRespiratory.Value = respiratoryValue.Item2;
|
||
}
|
||
|
||
|
||
var isIno = !string.IsNullOrEmpty(obs.Code) && _oniCodes.Contains(obs.Code);
|
||
|
||
if (isIno && !pobs.Expired) calculatedRespiratory.Value = 10;
|
||
|
||
|
||
//Check if last ino exist and is not expired
|
||
var lastsIno = await _observationService.Value.FindLastObservations(obs.PatientId, 1, ["ONi"]);
|
||
var lastIno = lastsIno.FirstOrDefault();
|
||
if (lastIno is { Expired: false }) calculatedRespiratory.Value = 10;
|
||
|
||
await _observationService.Value.InsertObservation(calculatedRespiratory, mapObs: false);
|
||
|
||
return obs;
|
||
}
|
||
|
||
/// <summary>
|
||
/// Updates the synthetic <c>ECMO</c> observation according to the treatment's <c>OrderControl</c>:
|
||
/// <c>NW</c> sets it to <c>NW</c>, <c>DC</c> sets it to <c>XO</c> if any other ECMO treatment
|
||
/// remains active or to <c>DC</c> otherwise, and any other <c>OrderControl</c> is ignored.
|
||
/// In every case the change is followed by a complexity recalculation via <c>CalculateComplexity</c>.
|
||
/// </summary>
|
||
/// <param name="treatment">The treatment whose ECMO state is being applied.</param>
|
||
/// <returns>A task that represents the asynchronous recalculation operation.</returns>
|
||
private async Task CalculateComplexityOnEcmo(PatientTreatment treatment)
|
||
{
|
||
var ecmoObs = new PatientObservation
|
||
{
|
||
PatientId = treatment.PatientId,
|
||
Name = "ECMO"
|
||
};
|
||
|
||
switch (treatment.OrderControl)
|
||
{
|
||
case OrderControlType.Nw:
|
||
ecmoObs.Value = OrderControlType.Nw;
|
||
|
||
break;
|
||
case OrderControlType.Dc:
|
||
var haveEcmo = await _treatmentService.Value.GetActiveTreatmentsByPatient(treatment.PatientId);
|
||
|
||
|
||
ecmoObs.Value = haveEcmo.Any(t => t != null && t.RequestedGiveCodes.Any(r =>
|
||
_ecmo.Contains(r.Identifier) &&
|
||
t.PlacerOrder?.EntityIdentifier != treatment.PlacerOrder?.EntityIdentifier))
|
||
? OrderControlType.Xo
|
||
: OrderControlType.Dc;
|
||
|
||
break;
|
||
|
||
default:
|
||
return;
|
||
}
|
||
|
||
await CalculateComplexity(ecmoObs);
|
||
}
|
||
|
||
/// <summary>
|
||
/// Recalculates the patient's overall <c>Complexity</c> observation from scratch using the latest
|
||
/// values for the configured complexity-contributing observations (weight, medication, surgery,
|
||
/// intravenous lines, monitor, and respiratory), the active ECMO treatment state, and the
|
||
/// optionally supplied <paramref name="obs"/> which is preferred over the database value when
|
||
/// it is newer and not expired. The result is persisted only when its integer value differs
|
||
/// from the last stored complexity observation, with time inconsistencies resolved via
|
||
/// <c>FixTimeInconsistencyWithLast</c>. Returns the original observation unchanged.
|
||
/// </summary>
|
||
/// <param name="obs">The base patient observation that triggered the recalculation.</param>
|
||
/// <param name="ignoreObs">When <see langword="true"/>, the supplied <paramref name="obs"/> is not added to the calculation inputs (useful for synthetic observations like ECMO).</param>
|
||
/// <returns>A task that resolves to the same base patient observation that was passed in.</returns>
|
||
public async Task<BasePatientObservation> CalculateComplexity(BasePatientObservation obs, bool ignoreObs = false)
|
||
{
|
||
try
|
||
{
|
||
var logUid = Guid.NewGuid();
|
||
var complexity = new PatientObservation
|
||
{
|
||
PatientId = obs.PatientId,
|
||
Time = DateTime.UtcNow,
|
||
CodingSystem = "ADAS",
|
||
Name = "Complexity",
|
||
Value = 0
|
||
};
|
||
var complexityValue = 0;
|
||
var activeTreatments = await _treatmentService.Value.GetActiveTreatmentsByPatient(obs.PatientId);
|
||
var haveEcmo = activeTreatments.Any(t =>
|
||
t != null && t.RequestedGiveCodes.Any(r => _ecmo.Contains(r.Identifier)));
|
||
var pobs = obs as PatientObservation;
|
||
|
||
var complexityObservations =
|
||
await _observationService.Value.FindLastObservations(obs.PatientId, 1, _complexityObservations);
|
||
|
||
//Nos acaba de entrar, la usamos por delante de la última de base de datos
|
||
//21-02-22 No es correcto, solo remover si el tiempo de esa observación que entra es más nuevo que la de bd
|
||
var actualObsInBd = complexityObservations.FirstOrDefault(o => o.Name == obs.Name);
|
||
if (actualObsInBd != null && obs.Time > actualObsInBd.Time)
|
||
complexityObservations.RemoveAll(it =>
|
||
it.Name == obs.Name);
|
||
|
||
if (!ignoreObs && pobs is { Expired: false }) complexityObservations.Add(pobs);
|
||
|
||
foreach (var observation in complexityObservations)
|
||
switch (observation.Name)
|
||
{
|
||
case "Weight_Current":
|
||
// if(observation.expired) break; A este no le importa que esté expirado, lo tiene que hacer siempre.
|
||
var weightCurrentValue = await CalculateWeight(observation);
|
||
|
||
_logger.LogDebug(
|
||
"complexity for patient {patientid} id log{logUID} => Weight_Current plus complexity: {WeightCurrentValue}",
|
||
observation.PatientId, logUid, weightCurrentValue);
|
||
complexityValue += weightCurrentValue;
|
||
break;
|
||
|
||
case "Weight_Newborn": //Only count newborn weight when weight current don't exist.
|
||
if (complexityObservations.FirstOrDefault(o => o.Name == "Weight_Current") == null)
|
||
{
|
||
var weightNewbornValue = await CalculateWeight(observation);
|
||
_logger.LogDebug(
|
||
"complexity for patient {patientid} id log{logUID} => Weight_Newborn plus complexity: {Weight_NewbornValue}",
|
||
observation.PatientId, logUid, weightNewbornValue);
|
||
complexityValue += weightNewbornValue;
|
||
}
|
||
|
||
break;
|
||
|
||
case "Medication":
|
||
if (observation.Expired) break;
|
||
var value = observation.Value.ToString();
|
||
|
||
if (!int.TryParse(value, out var valueParsed))
|
||
valueParsed = 0;
|
||
|
||
_logger.LogDebug(
|
||
"complexity for patient {patientid} id log{logUID} => Medication plus complexity: {valueParsed}",
|
||
observation.PatientId, logUid, valueParsed);
|
||
complexityValue += valueParsed;
|
||
break;
|
||
|
||
case "Surgery":
|
||
if (observation.Expired) break;
|
||
var surgeryValue = Convert.ToInt32(observation.Value);
|
||
_logger.LogDebug(
|
||
"complexity for patient {patientid} id log{logUID} => Surgery plus complexity: {surgeryValue}",
|
||
observation.PatientId, logUid, surgeryValue);
|
||
complexityValue += surgeryValue;
|
||
break;
|
||
|
||
case "IntravenousLines":
|
||
if (observation.Expired) break;
|
||
var intravenousLinesValue = Convert.ToInt32(observation.Value);
|
||
_logger.LogDebug(
|
||
"complexity for patient {patientid} id log{logUID} => IntravenousLines plus complexity: {IntravenousLinesValue}",
|
||
observation.PatientId, logUid, intravenousLinesValue);
|
||
complexityValue += intravenousLinesValue;
|
||
break;
|
||
|
||
case "Monitor":
|
||
if (observation.Expired) continue;
|
||
var monitorValue = Convert.ToInt32(observation.Value);
|
||
_logger.LogDebug(
|
||
"complexity for patient {patientid} id log{logUID} => monitor plus complexity: {monitorValue}",
|
||
observation.PatientId, logUid, monitorValue);
|
||
complexityValue += monitorValue;
|
||
break;
|
||
|
||
case "Respiratory":
|
||
if (observation.Expired) break;
|
||
var respiratoryValue = Convert.ToInt32(observation.Value);
|
||
_logger.LogDebug(
|
||
"complexity for patient {patientid} id log{logUID} => respiratory plus complexity: {respiratoryValue}",
|
||
observation.PatientId, logUid, respiratoryValue);
|
||
complexityValue += respiratoryValue;
|
||
break;
|
||
}
|
||
|
||
complexity.Value = complexityValue;
|
||
|
||
if (haveEcmo && obs.Name != "ECMO")
|
||
//complexity.value = $"ECMO ({complexityValue})";
|
||
complexity.Value = $"{complexityValue} ECMO";
|
||
|
||
if (complexityObservations.Any(o => o.Name == "ECMO"))
|
||
{
|
||
var ecmoObs = complexityObservations.FirstOrDefault(o => o.Name == "ECMO");
|
||
|
||
if (Enum.TryParse(typeof(OrderControlType), ecmoObs?.Value.ToString(), out var treatmentControl))
|
||
switch (treatmentControl)
|
||
{
|
||
case OrderControlType.Dc:
|
||
break;
|
||
//case OrderControlType.XO:
|
||
//case OrderControlType.NW:
|
||
default:
|
||
//complexity.value = $"ECMO ({complexityValue})";
|
||
complexity.Value = $"{complexityValue} ECMO";
|
||
//var pObs = await FixTimeInconsistencyWithLast(complexity);
|
||
if (pobs != null)
|
||
await _observationService.Value.InsertObservation(pobs);
|
||
break;
|
||
}
|
||
}
|
||
|
||
var lastsObsComplexity =
|
||
await _observationService.Value.FindLastObservations(obs.PatientId, 1, [complexity.Name]);
|
||
var lastObsComplexity = lastsObsComplexity.FirstOrDefault();
|
||
if (lastObsComplexity is not null)
|
||
{
|
||
var lastObsParsed = int.TryParse(lastObsComplexity.Value.ToString(), out var lastObsValue);
|
||
|
||
if (lastObsParsed && int.TryParse(complexity.Value.ToString(), out var intValue) &&
|
||
lastObsValue == intValue) return obs;
|
||
}
|
||
|
||
var fixedTimeComplexity = await FixTimeInconsistencyWithLast(complexity);
|
||
_logger.LogDebug(
|
||
"complexity for patient {patientid} id log{logUID} => inserting complexity value: {complexityValue} for patient: {complexityPatientid} at time {fixedTimeComplexityTime}",
|
||
complexity.PatientId, logUid, complexity.Value, complexity.PatientId, fixedTimeComplexity?.Time);
|
||
|
||
if (fixedTimeComplexity != null)
|
||
await _observationService.Value.InsertObservation(fixedTimeComplexity, mapObs: false);
|
||
|
||
return obs;
|
||
}
|
||
catch (Exception ex)
|
||
{
|
||
_logger.LogError("Error calculating complexity. Exception: {ex}", ex);
|
||
return obs;
|
||
}
|
||
}
|
||
|
||
/// <summary>
|
||
/// Recomputes the <c>IntravenousLines</c> complexity score by reconciling the incoming
|
||
/// <c>IntravenousLinesObs</c> against the patient's active intravenous lines. Detects and
|
||
/// corrects common ICCA mis-clicks (inserts incorrectly carrying a remove time), updates an
|
||
/// existing line in place when only the duration changed, and otherwise adds the new line to
|
||
/// the active set. The aggregated score is capped at 10 and persisted with bounds [0, 10].
|
||
/// <c>InvalidCastException</c>s are logged and swallowed.
|
||
/// </summary>
|
||
/// <param name="obs">The base patient observation that triggered the calculation (expected to be a <see cref="PatientObservation"/> whose <c>Value</c> is a <see cref="PatientIntravenousLinesValue"/>).</param>
|
||
/// <returns>
|
||
/// A task that resolves to the original base patient observation when processing succeeds or
|
||
/// fails gracefully with logging; resolves to <see langword="null"/> when the function returns
|
||
/// early because the incoming observation is a duplicate insert (in which case the caller should
|
||
/// not overwrite the stored observation).
|
||
/// </returns>
|
||
public async Task<BasePatientObservation?> CalculateIntravenousLineObservation(BasePatientObservation obs)
|
||
{
|
||
try
|
||
{
|
||
var pobs = (PatientObservation)obs;
|
||
var intravenousLineValue = (PatientIntravenousLinesValue)pobs.Value;
|
||
|
||
//Check for doctor miss click on ICCA. sometimes they put insert with remove time
|
||
//when it has a remove time always is remove, never insert
|
||
if (intravenousLineValue is { Action: "Insertado", RemoveTime: not null })
|
||
intravenousLineValue.Action = "Retirado";
|
||
|
||
|
||
//GetByCodeSysAndCode active Intravenous observations
|
||
//var intraVenousLineObservations = observationService.Value.FindLastObservations(obs.patientid, 1, new List<string> { obs.name });
|
||
List<PatientObservation?> activeIntraVenousLineObservations = [];
|
||
try
|
||
{
|
||
activeIntraVenousLineObservations =
|
||
await _observationService.Value.FindLastIntravenousLinesObservationByLocation(obs.PatientId);
|
||
}
|
||
catch (Exception ex)
|
||
{
|
||
_logger.LogWarning(
|
||
"Cannot transform to PatientObservation value to PatientIntravenousLinesValue {exMessage}",
|
||
ex.Message);
|
||
}
|
||
|
||
if (activeIntraVenousLineObservations.Any())
|
||
activeIntraVenousLineObservations = activeIntraVenousLineObservations.FindAll(v =>
|
||
v != null && ((PatientIntravenousLinesValue)v.Value).Action == "Insertado");
|
||
/*
|
||
var activeIntravenousLineObservations = intraVenousLineObservations.GroupBy(obs => (((PatientIntravenousLinesValue)obs.value).type,
|
||
((PatientIntravenousLinesValue)obs.value).insertTime,
|
||
((PatientIntravenousLinesValue)obs.value).location))
|
||
.Where(grp => grp.All(o => ((PatientIntravenousLinesValue)o.value).RemoveTime == null))
|
||
.SelectMany(group => group).ToList();
|
||
*/
|
||
//If intravenous obs have remove time, remove it from activeIntravenousLines before calculating.
|
||
|
||
if (intravenousLineValue.RemoveTime != null)
|
||
{
|
||
activeIntraVenousLineObservations.RemoveAll(o =>
|
||
o != null && ((PatientIntravenousLinesValue)o.Value).Location == intravenousLineValue.Location);
|
||
}
|
||
else
|
||
{
|
||
//If insert come with same data than other insert and same insertTime is update. Don't need to register it again as insert.is updated
|
||
var intravenousLineBeforeUpdate = activeIntraVenousLineObservations.FirstOrDefault(o => o != null &&
|
||
((PatientIntravenousLinesValue)o.Value).Location == intravenousLineValue.Location &&
|
||
Equals(((PatientIntravenousLinesValue)o.Value).InsertTime, intravenousLineValue.InsertTime) &&
|
||
((PatientIntravenousLinesValue)o.Value).Type == intravenousLineValue.Type &&
|
||
intravenousLineValue.RemoveTime == null);
|
||
|
||
if (intravenousLineBeforeUpdate != null)
|
||
{
|
||
//If duration changed Update register
|
||
|
||
if (((PatientIntravenousLinesValue)intravenousLineBeforeUpdate.Value).Duration ==
|
||
intravenousLineValue.Duration)
|
||
return null;
|
||
|
||
((PatientIntravenousLinesValue)intravenousLineBeforeUpdate.Value).Duration =
|
||
intravenousLineValue.Duration ?? string.Empty;
|
||
|
||
await _observationService.Value.UpdateObservation(intravenousLineBeforeUpdate);
|
||
|
||
return null;
|
||
}
|
||
|
||
|
||
if (!activeIntraVenousLineObservations.Any(o =>
|
||
o != null &&
|
||
((PatientIntravenousLinesValue)o.Value).Location == intravenousLineValue.Location &&
|
||
((PatientIntravenousLinesValue)o.Value).Type == intravenousLineValue.Type))
|
||
activeIntraVenousLineObservations.Add(pobs);
|
||
}
|
||
|
||
//Generate calculad intravenousLine obs
|
||
|
||
//var intraVenousLineScore2 = activeIntraVenousLineObservations.Select(activeObservation => IntraVenousLinesTypeValue.Where(i => i.Item3.Contains(((PatientIntravenousLinesValue)activeObservation.value).type))).Select(typeValue => typeValue.FirstOrDefault()?.Item2??0).Sum();
|
||
|
||
// Step 1: Select active observations and cast to PatientIntravenousLinesValue
|
||
var activeObservations = activeIntraVenousLineObservations.Select(activeObservation =>
|
||
(PatientIntravenousLinesValue?)activeObservation?.Value);
|
||
|
||
// Step 2: Match active observations with type-value mappings
|
||
// We use .Replace("\u00A0", " ") on type to avoid special codification for spaces between characters
|
||
var matchedValues = activeObservations.Select(activeObservation => _intraVenousLinesTypeValue.Where(i =>
|
||
activeObservation is { Type: not null } &&
|
||
i.Item3.Contains(activeObservation.Type.Replace("\u00A0", " "))))
|
||
.ToList();
|
||
|
||
// Step 3: Extract the values from matched tuples
|
||
var values = 0;
|
||
matchedValues.ForEach(typeValue => values += typeValue.FirstOrDefault()?.Item2 ?? 0);
|
||
|
||
// Step 4: Calculate the sum
|
||
var intraVenousLineScore = values;
|
||
|
||
if (intraVenousLineScore > 10) intraVenousLineScore = 10;
|
||
|
||
|
||
var intravenousObs = new PatientObservation
|
||
{
|
||
PatientId = obs.PatientId,
|
||
Name = "IntravenousLines",
|
||
Min = 0,
|
||
CodingSystem = "ADAS",
|
||
Max = 10,
|
||
Time = DateTime.UtcNow,
|
||
Value = intraVenousLineScore
|
||
};
|
||
|
||
var ob = await FixTimeInconsistencyWithLast(intravenousObs);
|
||
if (ob != null)
|
||
await _observationService.Value.InsertObservation(ob, mapObs: false);
|
||
}
|
||
catch (InvalidCastException ex)
|
||
{
|
||
_logger.LogError("CalculateIntravenousLineObservation {obs}: {exMessage}", obs, ex.Message);
|
||
}
|
||
|
||
return obs;
|
||
}
|
||
|
||
/// <summary>
|
||
/// Derives the weight-related complexity contribution from a weight observation: values expressed
|
||
/// in kilograms are first converted to grams via <c>ParseWeight</c>, and the final integer complexity
|
||
/// contribution is mapped from the gram value using the standard UCIN brackets
|
||
/// (< 750 g → 7, 750–999 → 5, 1000–1249 → 2, 1250–1999 → 1, ≥ 2000 → 0). Returns 0 when the
|
||
/// observation value cannot be parsed as a number.
|
||
/// </summary>
|
||
/// <param name="obs">The base patient observation whose value represents the patient's weight.</param>
|
||
/// <returns>A task that resolves to the integer complexity contribution (0–7).</returns>
|
||
private async Task<int> CalculateWeight(BasePatientObservation obs)
|
||
{
|
||
var complexityValueOfWeight = 0;
|
||
if (obs.Units == "kg") obs = await ParseWeight(obs);
|
||
|
||
var pobs = (PatientObservation)obs;
|
||
|
||
|
||
if (!double.TryParse(pobs.Value.ToString(), out var valueParsed))
|
||
return complexityValueOfWeight;
|
||
|
||
complexityValueOfWeight = valueParsed switch
|
||
{
|
||
< 750 => 7,
|
||
>= 750 and <= 999 => 5,
|
||
>= 1000 and <= 1249 => 2,
|
||
>= 1250 and <= 1999 => 1,
|
||
>= 2000 => 0,
|
||
_ => complexityValueOfWeight
|
||
};
|
||
|
||
return complexityValueOfWeight;
|
||
}
|
||
|
||
/// <summary>
|
||
/// Converts a weight observation expressed in kilograms to grams in-place (updates <c>Units</c> to
|
||
/// <c>"gr"</c> and multiplies <c>Value</c> by 1000). Returns the observation unchanged when it is
|
||
/// not a <see cref="PatientObservation"/> or when its value cannot be parsed; the error is also
|
||
/// logged.
|
||
/// </summary>
|
||
/// <param name="obs">The base patient observation expected to be a <see cref="PatientObservation"/> with a numeric value.</param>
|
||
/// <returns>A task that resolves to the (possibly converted) base patient observation.</returns>
|
||
public Task<BasePatientObservation> ParseWeight(BasePatientObservation obs)
|
||
{
|
||
if (obs is not PatientObservation pobs || !double.TryParse(pobs.Value.ToString(), out var dValue))
|
||
{
|
||
_logger.LogError("Error casting weight Observation {obs}:", obs);
|
||
return Task.FromResult(obs);
|
||
}
|
||
|
||
pobs.Units = "gr";
|
||
pobs.Value = dValue * 1000;
|
||
return Task.FromResult(obs);
|
||
}
|
||
|
||
/// <summary>
|
||
/// Recalculates the <c>Monitor</c> observation by adding 1 point for each active
|
||
/// transcutaneous / regional-brain-saturation / EEG monitoring signal (codes from the configured
|
||
/// catalogues) found in the most recent observations and active treatments. Persists the resulting
|
||
/// observation with bounds [0, 3]. Returns early with a warning when no recent monitor observations
|
||
/// are found.
|
||
/// </summary>
|
||
/// <param name="monitorObservation">
|
||
/// The trigger for the calculation. Accepts either a <see cref="PatientObservation"/>
|
||
/// (preferred when available) or a <see cref="PatientTreatment"/>. The patient identifier is
|
||
/// derived from whichever type is supplied.
|
||
/// </param>
|
||
/// <returns>A task that represents the asynchronous calculation operation.</returns>
|
||
public async Task CalculateMonitor(object monitorObservation)
|
||
{
|
||
var monitorValue = 0;
|
||
BasePatientObservation? pobs = null;
|
||
ObjectId patientId = new();
|
||
PatientTreatment? tobs = null;
|
||
|
||
if (monitorObservation.GetType() == typeof(PatientObservation))
|
||
{
|
||
pobs = (BasePatientObservation)monitorObservation;
|
||
patientId = pobs.PatientId;
|
||
}
|
||
else if (monitorObservation.GetType() == typeof(PatientTreatment))
|
||
{
|
||
tobs = (PatientTreatment)monitorObservation;
|
||
patientId = tobs.PatientId;
|
||
}
|
||
|
||
|
||
//Observations in last 30 min are active
|
||
var activeMonitorObservationsList = await _observationService.Value.FindLastObservations(patientId, 1,
|
||
["Saturation_RegBrain", "Saturation_RegSomatic", "Transcutaneous_O2"]);
|
||
if (!activeMonitorObservationsList.Any())
|
||
{
|
||
_logger.LogWarning("Active Monitor Observation List is null or empty for patientId: {patientId}",
|
||
patientId);
|
||
return;
|
||
}
|
||
|
||
var activeMonitorObservations = activeMonitorObservationsList.FindAll(o => !o.Expired);
|
||
|
||
|
||
if (pobs != null && !((PatientObservation)pobs).Expired)
|
||
activeMonitorObservations.Add((PatientObservation)pobs);
|
||
|
||
if (activeMonitorObservations.Any(o => o.Code != null && _transcutanous.Contains(o.Code))) monitorValue += 1;
|
||
if (activeMonitorObservations.Any(o => o.Code != null && _regionalBrainSaturation.Contains(o.Code)))
|
||
monitorValue += 1;
|
||
|
||
|
||
//Patient treatment
|
||
var activeTreatments = await _treatmentService.Value.GetActiveTreatmentsByPatient(patientId);
|
||
|
||
activeTreatments = activeTreatments.ToList().FindAll(p =>
|
||
p != null && p.RequestedGiveCodes.Any(r =>
|
||
_electroencephalogram.Contains(r.Identifier) && r.Text.Contains("Monitor EEGa")));
|
||
|
||
if (tobs != null && tobs.OrderControl != OrderControlType.Dc && activeTreatments.Any()) monitorValue += 1;
|
||
else if (tobs is { OrderControl: OrderControlType.Nw }) monitorValue += 1;
|
||
|
||
|
||
//Generate calculad monitor obs
|
||
var monitorObs = new PatientObservation
|
||
{
|
||
PatientId = patientId,
|
||
Name = "Monitor",
|
||
CodingSystem = "ADAS",
|
||
Min = 0,
|
||
Max = 3,
|
||
Time = DateTime.Now,
|
||
Value = monitorValue
|
||
};
|
||
|
||
await _observationService.Value.InsertObservation(monitorObs, mapObs: false);
|
||
}
|
||
|
||
/// <summary>
|
||
/// Recalculates the <c>Surgery</c> complexity score by reconciling the supplied treatment's
|
||
/// <c>OrderControl</c> (<c>NW</c> adds, <c>DC</c> removes by placer-order identifier) against the
|
||
/// patient's other active surgery treatments, then persisting a <c>Surgery</c> observation
|
||
/// with a score of 5 when any active surgery treatment remains, or 0 otherwise.
|
||
/// </summary>
|
||
/// <param name="treatment">The treatment that triggered the recalculation.</param>
|
||
/// <returns>A task that represents the asynchronous calculation operation.</returns>
|
||
private async Task CalculateSurgery(PatientTreatment treatment)
|
||
{
|
||
var surgeryScore = 0;
|
||
var activeTreatments = await _treatmentService.Value.GetActiveTreatmentsByPatient(treatment.PatientId);
|
||
//Filter only surgery treatments
|
||
var activeSurgeryTreatments = activeTreatments.ToList().FindAll(t =>
|
||
t != null && t.RequestedGiveCodes.Any(code =>
|
||
_surgery.Contains(code.Identifier) && _surgeryText.Contains(code.Text)));
|
||
|
||
switch (treatment.OrderControl)
|
||
{
|
||
//Refactor solo con los tratamientos activos de cirugía, un DC cancela a su entityIdentifier correspondiente.
|
||
|
||
case OrderControlType.Nw:
|
||
activeSurgeryTreatments.Add(treatment);
|
||
break;
|
||
case OrderControlType.Dc:
|
||
activeSurgeryTreatments.RemoveAll(t =>
|
||
t != null && t.PlacerOrder?.EntityIdentifier == treatment.PlacerOrder?.EntityIdentifier);
|
||
break;
|
||
}
|
||
|
||
|
||
if (activeSurgeryTreatments.Count > 0) surgeryScore = 5;
|
||
|
||
var surgeryObs = new PatientObservation
|
||
{
|
||
PatientId = treatment.PatientId,
|
||
Name = "Surgery",
|
||
Min = 0,
|
||
Max = 5,
|
||
CodingSystem = "ADAS",
|
||
Time = DateTime.Now,
|
||
Value = surgeryScore
|
||
};
|
||
|
||
await _observationService.Value.InsertObservation(surgeryObs, mapObs: false);
|
||
}
|
||
|
||
/// <summary>
|
||
/// Computes the patient's active bolus treatments by:
|
||
/// (1) optionally including the newly arrived treatment, (2) grouping all bolus-eligible treatments
|
||
/// by placer-order <c>NamespaceId</c>, (3) discarding treatments whose administration time was
|
||
/// later overridden by an end-time, (4) keeping only the latest message-time entry per distinct
|
||
/// administration time, and (5) filtering to the configured medication-bolus catalogue, an
|
||
/// administration time within the last 12 hours, and a non-empty RXA status contained in
|
||
/// <c>_rxaStatus</c>.
|
||
/// </summary>
|
||
/// <param name="patientId">The unique identifier of the patient.</param>
|
||
/// <param name="newTreatment">The optional new treatment to be included in the active-bolus set.</param>
|
||
/// <returns>A task that resolves to the list of treatments currently counted as active boluses.</returns>
|
||
private async Task<List<PatientTreatment>> GetActiveBolus(ObjectId patientId, PatientTreatment? newTreatment)
|
||
{
|
||
var treatmentsProcessed = new List<PatientTreatment>();
|
||
var activeTreatments = await _treatmentService.Value.GetBolusTreatments(patientId);
|
||
|
||
|
||
if (newTreatment != null) activeTreatments.Add(newTreatment);
|
||
|
||
//Agrupar por namespaceID y quedarme con el último message time que será el último que han reecho.
|
||
//Si ese último es concluido suma 1.
|
||
|
||
var treatmentsGroupedByNamespaceId = activeTreatments
|
||
.GroupBy(t => t.PlacerOrder?.NamespaceId)
|
||
//.Select(group => group.OrderByDescending(t => t.messageTime)).ToList();
|
||
.Select(grp => grp.ToList())
|
||
.ToList();
|
||
//.Select(g => g.FirstOrDefault()).ToList();
|
||
|
||
foreach (var treatmentGroup in treatmentsGroupedByNamespaceId)
|
||
{
|
||
var modificatedBolus = treatmentGroup.FindAll(t =>
|
||
t.RequestedGiveCodesStatus.Any(r => r.EndAdministrationTime != DateTime.MinValue));
|
||
//Eliminamos todos aquellos que han sido modificados con posterioridad, esto nos lo indica cuando tiene endAdministrationTime != null
|
||
treatmentGroup.RemoveAll(t =>
|
||
modificatedBolus.Any(m => m.RequestedGiveCodesStatus.FirstOrDefault()?.EndAdministrationTime
|
||
== t.RequestedGiveCodesStatus.FirstOrDefault()?.AdministrationTime));
|
||
/* treatmentGroup.RemoveAll(t => t.requestedGiveCodesStatus
|
||
.Any(r => r.endAdministrationTime == null && modificatedBolus.FirstOrDefault(m =>
|
||
m.requestedGiveCodesStatus.Any(code => code.endAdministrationTime == r.administrationTime))
|
||
!= null));
|
||
*/
|
||
//modificatedBolus.Any(b =>
|
||
// b.requestedGiveCodesStatus.Any(code => code.endAdministrationTime == r.administrationTime))));
|
||
|
||
|
||
//Opción B a veces se cancelan sin endTime. Simplemente, agrupar por administrationTime y quedarme con el último por time del mensaje.
|
||
treatmentGroup.RemoveAll(t => !t.RequestedGiveCodesStatus.Any());
|
||
|
||
var groupByAdmTime = treatmentGroup.GroupBy(t =>
|
||
t.RequestedGiveCodesStatus.FirstOrDefault()!.AdministrationTime)
|
||
.Select(grp => grp.OrderByDescending(t => t.MessageTime).First());
|
||
|
||
|
||
treatmentsProcessed.AddRange(groupByAdmTime);
|
||
//todos los que tengan startOfAdministration y no tenga esa fecha ninguno de modificatedBolus en endOfTreatment
|
||
}
|
||
|
||
|
||
return treatmentsProcessed
|
||
.FindAll(p =>
|
||
p.RequestedGiveCodes.Any(r => _medicationBolus.Contains(r.Identifier)) &&
|
||
p.RequestedGiveCodesStatus.FirstOrDefault() != null &&
|
||
p.RequestedGiveCodesStatus.FirstOrDefault()!.AdministrationTime?.ToUniversalTime() >
|
||
DateTime.UtcNow.AddHours(-12) &&
|
||
p.RequestedGiveCodesStatus.FirstOrDefault()!.AdministrationTime?.ToUniversalTime() <= DateTime.UtcNow &&
|
||
p.RequestedGiveCodesStatus.Any(rxa => rxa.Status != null && _rxaStatus.Contains(rxa.Status)));
|
||
}
|
||
|
||
/// <summary>
|
||
/// Persists the <c>OpiateBoluses</c> observation whose value is the count of currently active bolus
|
||
/// treatments for the patient (as computed by <c>GetActiveBolus</c> including the new treatment).
|
||
/// </summary>
|
||
/// <param name="treatment">The treatment that triggered the recalculation and should be included in the active-bolus set.</param>
|
||
/// <returns>A task that represents the asynchronous insert operation.</returns>
|
||
private async Task CalculateBolus(PatientTreatment treatment)
|
||
{
|
||
var activeBolus = await GetActiveBolus(treatment.PatientId, treatment);
|
||
|
||
var bolusObs = new PatientObservation
|
||
{
|
||
PatientId = treatment.PatientId,
|
||
Time = DateTime.Now,
|
||
Name = "OpiateBoluses",
|
||
CodingSystem = "ADAS",
|
||
Value = activeBolus.Count
|
||
};
|
||
await _observationService.Value.InsertObservation(bolusObs);
|
||
}
|
||
|
||
/// <summary>
|
||
/// Applies the red-alert rule for mean arterial pressure (TAm) in neonates: when TAm is below
|
||
/// the patient's gestational age (in weeks) for the first week, or below the fixed gestational
|
||
/// age thereafter, the <c>TAm</c> observation's <c>Status</c> is set to <c>Alert</c>; otherwise
|
||
/// it is set to <c>Ok</c>. If the supplied observation is a gestational-age value (not TAm),
|
||
/// a fresh TAm observation is re-inserted with the recalculated status. The threshold is read
|
||
/// from the latest <c>Age_Gestational</c> observation when its value is below 2 weeks,
|
||
/// otherwise from the latest <c>Age_Gestational_Fixed</c>.
|
||
/// </summary>
|
||
/// <param name="obs">The base patient observation that triggered the alert evaluation (<c>TAm</c>, <c>Age_Gestational</c>, or <c>Age_Gestational_Fixed</c>).</param>
|
||
/// <returns>A task that represents the asynchronous calculation operation.</returns>
|
||
public async Task CalculateTAmAlert(BasePatientObservation obs)
|
||
{
|
||
var pobs = (PatientObservation)obs;
|
||
var tamStatus = StatusEnum.Type.Ok;
|
||
var groupedObservations = new List<PatientObservation> { pobs };
|
||
|
||
var gestationalWeeksToCheck = 0;
|
||
|
||
if (obs.Name == "Age_Gestational")
|
||
groupedObservations = await _observationService.Value.FindLastObservations(obs.PatientId, 1,
|
||
["Age_Gestational_Fixed", "TAm"]);
|
||
if (obs.Name == "Age_Gestational_Fixed")
|
||
groupedObservations = await _observationService.Value.FindLastObservations(obs.PatientId, 1,
|
||
["Age_Gestational", "TAm"]);
|
||
|
||
if (obs.Name == "TAm")
|
||
groupedObservations = await _observationService.Value.FindLastObservations(obs.PatientId, 1,
|
||
["Age_Gestational", "Age_Gestational_Fixed"]);
|
||
|
||
var ageGestational = groupedObservations.FirstOrDefault(o => o.Name == "Age_Gestational");
|
||
if (ageGestational != null && int.TryParse(ageGestational.Value.ToString(), out var ageParsed) && ageParsed < 2)
|
||
{
|
||
gestationalWeeksToCheck = Convert.ToInt32(ageGestational.Value);
|
||
}
|
||
else
|
||
{
|
||
var ageGestationalFixed = groupedObservations.FirstOrDefault(o => o.Name == "Age_Gestational_Fixed");
|
||
if (ageGestationalFixed != null) gestationalWeeksToCheck = Convert.ToInt32(ageGestationalFixed.Value);
|
||
//var gestationalWeeks = int.Parse(ageGestationalFixed.value.ToString());
|
||
//if (Convert.ToInt32(pobs.value) < gestationalWeeks) TAmStatus = ObservationStatus.Alert;
|
||
}
|
||
|
||
var tamObs = groupedObservations.FirstOrDefault(o => o.Name == "TAm");
|
||
if (tamObs != null)
|
||
if (Convert.ToInt32(tamObs.Value) < gestationalWeeksToCheck)
|
||
tamStatus = StatusEnum.Type.Alert;
|
||
|
||
if (pobs.Name == "TAm")
|
||
{
|
||
pobs.Status = tamStatus;
|
||
}
|
||
else
|
||
{
|
||
if (tamObs != null)
|
||
{
|
||
tamObs.Id = ObjectId.GenerateNewId();
|
||
tamObs.Time = DateTime.Now;
|
||
tamObs.Status = tamStatus;
|
||
await _observationService.Value.InsertObservation(tamObs, mapObs: false);
|
||
}
|
||
}
|
||
}
|
||
|
||
/// <summary>
|
||
/// Computes the temperature gradient between the incubator and the patient (incubator − patient)
|
||
/// when both temperatures have been observed within 10 minutes of each other. Persists the
|
||
/// <c>Temp_Gradient</c> observation with the resulting value, after shifting its timestamp via
|
||
/// <c>CheckObsWithSameTimeExistsAndIncrementTime</c> to avoid colliding with a previous
|
||
/// gradient observation. Returns early when the companion temperature is missing or the two
|
||
/// readings fall outside the 10-minute window.
|
||
/// </summary>
|
||
/// <param name="obs">The base patient observation that triggered the calculation (<c>Temp_Patient</c> or <c>Temp_Incubator</c>).</param>
|
||
/// <returns>A task that represents the asynchronous calculation operation.</returns>
|
||
public async Task CalculateTempGradient(BasePatientObservation obs)
|
||
{
|
||
List<PatientObservation> tempRetrievedesFromBd;
|
||
PatientObservation? tempRetrievedFromBd = null;
|
||
var pobs = (PatientObservation)obs;
|
||
if ("Temp_Patient".Equals(pobs.Name))
|
||
{
|
||
tempRetrievedesFromBd =
|
||
await _observationService.Value.FindLastObservations(pobs.PatientId, 1, ["Temp_Incubator"]);
|
||
tempRetrievedFromBd = tempRetrievedesFromBd.FirstOrDefault();
|
||
}
|
||
|
||
if ("Temp_Incubator".Equals(pobs.Name))
|
||
{
|
||
tempRetrievedesFromBd =
|
||
await _observationService.Value.FindLastObservations(pobs.PatientId, 1, ["Temp_Patient"]);
|
||
tempRetrievedFromBd = tempRetrievedesFromBd.FirstOrDefault();
|
||
}
|
||
|
||
|
||
//Now Temp Gradient is only calculated when temp_Patient and Temp_Incubator come in last 10 min.
|
||
//if (tempRetrievedFromBd != null && DateTime.UtcNow.CompareTo(tempRetrievedFromBd.time.ToUniversalTime().AddMinutes(10)) <= 0)
|
||
if (tempRetrievedFromBd == null) return;
|
||
var difFechas = pobs.Time.ToUniversalTime() - tempRetrievedFromBd.Time.ToUniversalTime();
|
||
//if (tempRetrievedFromBd != null && pobs.time.ToUniversalTime().CompareTo(tempRetrievedFromBd.time.ToUniversalTime().AddMinutes(10)) <= 0)
|
||
if (Math.Abs(difFechas.TotalMinutes) <= 10 &&
|
||
double.TryParse(tempRetrievedFromBd.Value.ToString(), out var tempRetrievedFromBdParsed) &&
|
||
double.TryParse(pobs.Value.ToString(), out var pobsParsed))
|
||
{
|
||
double tempGradientValue;
|
||
if ("Temp_Patient".Equals(pobs.Name))
|
||
tempGradientValue = tempRetrievedFromBdParsed - pobsParsed;
|
||
else
|
||
tempGradientValue = pobsParsed - tempRetrievedFromBdParsed;
|
||
var tempGradientObs = new PatientObservation
|
||
{
|
||
PatientId = obs.PatientId,
|
||
Name = "Temp_Gradient",
|
||
CodingSystem = "ADAS",
|
||
Time = obs.Time,
|
||
Value = tempGradientValue
|
||
};
|
||
|
||
var obsToInsert = (PatientObservation)await CheckObsWithSameTimeExistsAndIncrementTime(tempGradientObs);
|
||
|
||
obsToInsert.Id = ObjectId.GenerateNewId();
|
||
|
||
await _observationService.Value.InsertObservation(obsToInsert, mapObs: false);
|
||
}
|
||
}
|
||
|
||
/// <summary>
|
||
/// Enumeration of the intravenous-line types recognised by the UCIN complexity model,
|
||
/// ordered from most invasive (Artery) to least invasive (Peripheral).
|
||
/// </summary>
|
||
private enum IntraVenousLineTypes
|
||
{
|
||
Artery,
|
||
CentralVein,
|
||
Picc,
|
||
MiddleLine,
|
||
Peripheral
|
||
}
|
||
|
||
/// <summary>
|
||
/// Enumeration of the respiratory-assistance types recognised by the UCIN complexity model,
|
||
/// ordered from highest score (Ino) to lowest (None).
|
||
/// </summary>
|
||
// ReSharper disable once UnusedMember.Local
|
||
private enum RespiratoryTypes
|
||
{
|
||
Ino,
|
||
Vafo,
|
||
Vmc,
|
||
Vmni,
|
||
NasalCannulas,
|
||
None
|
||
}
|
||
} |